BBMRI.de/GBA Implementation Guide
1.2.0 - CI Build

BBMRI.de/GBA Implementation Guide - Local Development build (v1.2.0). See the Directory of published versions

: Specimen Quality Reports - TTL Representation

Draft as of 2023-09-01

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Measure ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "SpecimenQualityReports"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Measure</b><a name=\"SpecimenQualityReports\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Measure &quot;SpecimenQualityReports&quot; </p></div><p><b>url</b>: <code>https://fhir.bbmri.de/Measure/SpecimenQualityReports</code></p><p><b>version</b>: 1.2.0</p><p><b>name</b>: SpecimenQualityReports</p><p><b>title</b>: Specimen Quality Reports</p><p><b>status</b>: draft</p><p><b>subject</b>: Specimen <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://hl7.org/fhir/R4/codesystem-resource-types.html\">ResourceType</a>#Specimen)</span></p><p><b>date</b>: 2023-09-01 11:58:43+0000</p><p><b>publisher</b>: bbmri.de</p><p><b>contact</b>: bbmri.de: <a href=\"bbmri.de\">bbmri.de</a>,<a href=\"mailto:feedback@germanbiobanknode.de\">feedback@germanbiobanknode.de</a></p><p><b>description</b>: This measure contains various specimen related stratifiers to help to evaluate data quality.</p><p><b>library</b>: <a href=\"Library-SpecimenQualityReports.html\">Specimen Quality Reports</a></p><p><b>scoring</b>: Cohort <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-measure-scoring.html\">MeasureScoring</a>#cohort)</span></p><blockquote><p><b>group</b></p><blockquote><p><b>population</b></p><p><b>code</b>: Initial Population <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-measure-population.html\">MeasurePopulationType</a>#initial-population)</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>InInitialPopulation</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: FirstSampleMaterialType <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>FirstSampleMaterialType</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: NumberOfSampleMaterialTypes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>NumberOfSampleMaterialTypes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: CollectedYear <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>CollectedYear</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: CollectedMonth <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>CollectedMonth</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: CollectedDay <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>CollectedDay</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: CollectedHour <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>CollectedHour</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: StorageTemperatureCodes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>StorageTemperatureCodes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: NumberOfStorageTemperatureCodes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>NumberOfStorageTemperatureCodes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: SampleDiagnosisICD10Codes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>SampleDiagnosisICD10Codes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: NumberOfSampleDiagnosesICD10Codes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>NumberOfSampleDiagnosesICD10Codes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: SampleDiagnosisICD10GMCodes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>SampleDiagnosisICD10GMCodes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: NumberOfSampleDiagnosesICD10GMCodes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>NumberOfSampleDiagnosesICD10GMCodes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: BodySiteCodes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>BodySiteCodes</td></tr></table></blockquote><blockquote><p><b>stratifier</b></p><p><b>code</b>: NumberOfBodySiteCodes <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> ()</span></p><h3>Criteria</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Language</b></td><td><b>Expression</b></td></tr><tr><td style=\"display: none\">*</td><td>text/cql</td><td>NumberOfBodySiteCodes</td></tr></table></blockquote></blockquote></div>"
  ] ; # 
  fhir:url [ fhir:v "https://fhir.bbmri.de/Measure/SpecimenQualityReports"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "1.2.0"] ; # 
  fhir:name [ fhir:v "SpecimenQualityReports"] ; # 
  fhir:title [ fhir:v "Specimen Quality Reports"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:subject [
a fhir:CodeableConcept ;
    ( fhir:coding [
fhir:system [ fhir:v "http://hl7.org/fhir/resource-types"^^xsd:anyURI ] ;
fhir:code [ fhir:v "Specimen" ]     ] )
  ] ; # 
  fhir:date [ fhir:v "2023-09-01T11:58:43+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "bbmri.de"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "bbmri.de" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "bbmri.de" ]     ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "feedback@germanbiobanknode.de" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "This measure contains various specimen related stratifiers to help to evaluate data quality."] ; # 
  fhir:library ( [
fhir:v "https://fhir.bbmri.de/Library/SpecimenQualityReports"^^xsd:anyURI ;
fhir:link <https://fhir.bbmri.de/Library/SpecimenQualityReports>
  ] ) ; # 
  fhir:scoring [
    ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/measure-scoring"^^xsd:anyURI ] ;
fhir:code [ fhir:v "cohort" ]     ] )
  ] ; # 
  fhir:group ( [
    ( fhir:population [
fhir:code [
        ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/measure-population"^^xsd:anyURI ] ;
fhir:code [ fhir:v "initial-population" ]         ] )       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "InInitialPopulation" ]       ]     ] ) ;
    ( fhir:stratifier [
fhir:code [
fhir:text [ fhir:v "FirstSampleMaterialType" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "FirstSampleMaterialType" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "NumberOfSampleMaterialTypes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "NumberOfSampleMaterialTypes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "CollectedYear" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "CollectedYear" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "CollectedMonth" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "CollectedMonth" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "CollectedDay" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "CollectedDay" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "CollectedHour" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "CollectedHour" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "StorageTemperatureCodes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "StorageTemperatureCodes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "NumberOfStorageTemperatureCodes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "NumberOfStorageTemperatureCodes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "SampleDiagnosisICD10Codes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "SampleDiagnosisICD10Codes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "NumberOfSampleDiagnosesICD10Codes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "NumberOfSampleDiagnosesICD10Codes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "SampleDiagnosisICD10GMCodes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "SampleDiagnosisICD10GMCodes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "NumberOfSampleDiagnosesICD10GMCodes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "NumberOfSampleDiagnosesICD10GMCodes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "BodySiteCodes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "BodySiteCodes" ]       ]     ] [
fhir:code [
fhir:text [ fhir:v "NumberOfBodySiteCodes" ]       ] ;
fhir:criteria [
fhir:language [ fhir:v "text/cql" ] ;
fhir:expression [ fhir:v "NumberOfBodySiteCodes" ]       ]     ] )
  ] ) . #